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Home | Breakfast | Ham Cheese and Veggie Baked Egg Cups

Ham Cheese and Veggie Baked Egg Cups

By: Erin Indahl-Fink
Modified: February 6, 2026 - Published: January 3, 2019 - 17 Comments

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Are your mornings crazy-busy? These delicious Ham and Veggie Baked Egg Cups are the perfect make-ahead breakfast solution for those mornings. Loaded with protein, these baked egg muffins cups with ham are the perfect healthy breakfast to start your day.

Are your mornings crazy-busy? These delicious Ham & Veggie Baked Egg Cups are the perfect make-ahead breakfast solution for those mornings. Loaded with protein, these baked egg muffins are the perfect healthy breakfast to start your day.

On a typical weekday, what are your mornings like? If you’re working a full time job and/or trying to get kids out the door to school, your mornings are likely to be a little like a circus. The idea of sitting down to a healthy, warm breakfast often feels like a dream – the opposite of reality.

But what if I told you that these Ham & Veggie Baked Egg Cups could be ready to go for breakfast in seconds? Yep, that’s right! A healthy, protein-packed breakfast that’s basically ready to go when you are. It’s real!

Okay, so I will preface this statement to say that these Baked Egg Muffins need to be made ahead of time. If you’re on board the meal prep bandwagon, you’ll know that healthy eating usually means having foods pre-made and ready to go for you when you need them.

Breakfast is certainly no exception. I’ll show you exactly how to make these delicious protein-packed, healthy Ham & Veggie Baked Egg Cups on the weekend, and have them ready to go for breakfast on your busy weekday mornings.

Here’s how these super-easy Ham & Veggie Baked Egg Cups are made:

Are your mornings crazy-busy? These delicious Ham & Veggie Baked Egg Cups are the perfect make-ahead breakfast solution for those mornings. Loaded with protein, these baked egg muffins are the perfect healthy breakfast to start your day.

What ingredients do I need for baked egg muffins?

These baked egg muffins include broccoli, bell pepper, red onion, diced ham (extra lean), and eggs. I also sprinkle on a little bit of shredded cheddar cheese. And when I say a little bit, I mean just a few shreds. If you are following Whole30 or Keto, feel free to omit the cheese, and you’ll be on plan!

Dice your ham, and veggies, and whisk together the eggs with a bit of salt and pepper to your liking. Your eggs will then be ready to go into the baking cups.

Are your mornings crazy-busy? These delicious Ham & Veggie Baked Egg Cups are the perfect make-ahead breakfast solution for those mornings. Loaded with protein, these baked egg muffins are the perfect healthy breakfast to start your day.

How do I make baked egg cups?

You will see in the photos that I’m using silicone baking cups. These bake beautifully! They make it so easy for the eggs to pop right out of the cups – no greasy baking spray, no buttering a muffin tin. Simply place the cups into the muffin tin and your set!

Add the diced ham, and veggies to each cup. I did approximately a 1/2 tablespoon of each: ham, broccoli, onion & pepper.

This recipe is a great option for using leftover ham. Another great leftover ham recipe is our Ham and Bean Soup in a Slow Cooker. Check out my recipe for How to Bake a Spiral Ham, which is fantastic as a holiday ham and simple enough for a weekend dinner.

Are your mornings crazy-busy? These delicious Ham & Veggie Baked Egg Cups are the perfect make-ahead breakfast solution for those mornings. Loaded with protein, these baked egg muffins are the perfect healthy breakfast to start your day.

Pour the whisked eggs over the top of the ham & veggies

In a mixing bowl, whisk together a dozen eggs. Add a bit of salt and pepper to your liking. Once the eggs are whisked together well, pour the eggs over the top of the filling in each cup.

Are your mornings crazy-busy? These delicious Ham & Veggie Baked Egg Cups are the perfect make-ahead breakfast solution for those mornings. Loaded with protein, these baked egg muffins are the perfect healthy breakfast to start your day.

Add a sprinkle of cheese to the baked egg cups – OPTIONAL!

To the top of the eggs and filling, add a sprinkling (maybe a half tablespoon) of shredded cheddar cheese. As you can see from the photo above, I just add a few shreds of cheese – nothing excessive. 

To keep things on the healthier side, feel free to use low-fat cheese, or leave out the cheese entirely. Omitting the cheese makes the recipe Whole30 and Keto-friendly!

Are your mornings crazy-busy? These delicious Ham & Veggie Baked Egg Cups are the perfect make-ahead breakfast solution for those mornings. Loaded with protein, these baked egg muffins are the perfect healthy breakfast to start your day.

How long do I bake egg muffins?

Once you have everything in the cups, bake the eggs for 16-18 minutes at 375 degrees or until the eggs are set. Remove from the oven and let cool for a few minutes before eating. If you are meal prepping these for later: let the egg muffins cool to room temperature. Place in resealable containers and refrigerate.

To reheat in the morning: place two egg muffins on a microwave-safe plate. Microwave for 45-60 seconds on high. Enjoy right away!

If you love eggs, be sure to check out my post for Starbucks Egg White Egg Bites, Spinach Egg Bake with Cottage Cheese and Healthy Egg Salad!

Are you looking to start meal prepping breakfast?

Meal prepping healthy breakfast options is a great way to have healthy choices made for yourself during busy mornings. Be sure to check out my post for Breakfast Meal Prep. It includes all of my healthy breakfast recipes as well as meal prep tips, tools and ideas for making meal prep easy!

Are you looking for some good grab and go breakfast ideas for work to keep you away from the greasy, drive-thru breakfast? I've got ya covered with these 20 Healthy Breakfast Meal Prep Ideas for your busiest mornings!

 

If you loved these delicious baked egg muffins, then check out some of my other make-ahead healthy breakfast recipes:

  • Egg and Sausage Scramble
  • High Protein Tiramisu Overnight Oats
  • Healthy Breakfast Sandwiches
  • Baked Spinach and Mushroom Frittata
  • Healthy French Toast
  • Blueberry Almond Chia Pudding
  • Blueberry Protein Muffins
  • Pumpkin Chocolate Chip Protein Muffins
  • Chocolate Overnight Oats
  • Healthy Pumpkin Pancakes
  • Apple Cinnamon Overnight Oats
  • Panettone French Toast

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Ham Cheese and Veggie Baked Egg Cups

Erin Indahl-Fink
Are your mornings crazy-busy? These delicious Ham & Veggie Baked Egg Cups are the perfect make-ahead breakfast solution for those mornings. Loaded with protein, these baked egg muffins are the perfect healthy breakfast to start your day.
No ratings yet
Healthy baked egg muffins, one muffin held in hand.
Print Recipe Remove Ads Pin Recipe
Prep Time 15 minutes mins
Cook Time 18 minutes mins
Total Time 33 minutes mins
Course Breakfast
Cuisine American
Servings 6
Calories 173 kcal

Equipment

  • Muffin Pan This non-stick muffin pan by Wilton is ideal for any muffin or cupcake recipe.
  • Silicone Baking Cups These silicone baking cups eliminate the need for paper liners or greasy non-stick spray. Muffins and cupcakes slide right out – no sticking!
  • Meal Prep Containers These glass meal prep containers are a fantastic leak-proof option for packing lunches for work or school.

Ingredients
  

  • 1/2 cup diced ham (extra-lean, trimmed of any excess fat)
  • 1/2 cup fresh broccoli cut into small pieces
  • 1/2 cup red onion diced
  • 1/2 cup bell pepper diced (any color)
  • 1/3 cup shredded cheddar cheese Optional
  • 12 eggs whisked
  • salt and pepper

Instructions
 

  • Preheat oven to 375 degrees. Line a muffin pan with silicone baking cups, or spray with non-stick baking spray. Set prepared pan aside.
  • Dice the ham and vegetables, and place approximately 1/2 tablespoon of each: ham, broccoli, onion and bell pepper into each cup.
  • Whisk the eggs well, and add salt and pepper to your liking. Pour the eggs mixture over the top of the ham and vegetables in each cup. Fill to nearly full. Top with a slight sprinkling of cheese, if desired.
  • Bake at 375 degrees for 16-18 minutes or until eggs are set. Remove from oven and let cool for 5 minutes before serving.

Notes

Yield: 12 egg muffins, Serving Size: 2 muffins
Meal Prep option: if prepping for breakfasts later in the week, remove egg cups from silicone baking cups. Place in resealable containers are refrigerate for up to 5 days. To reheat, place on microwave safe plate and microwave for 45-60 seconds.

Nutrition

Serving: 1gCalories: 173kcalCarbohydrates: 3gProtein: 15gFat: 11gSaturated Fat: 4gPolyunsaturated Fat: 2gMonounsaturated Fat: 4gTrans Fat: 0.03gCholesterol: 339mgSodium: 293mgPotassium: 195mgFiber: 1gSugar: 2gVitamin A: 973IUVitamin C: 23mgCalcium: 101mgIron: 2mg
Keyword baked egg cups, baked egg muffins, healthy egg muffin recipe, healthy egg muffins
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Make ahead baked egg cups in tin and baked egg muffins in cups.
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Comments

  1. Debra says

    01.07.2019 at 9:46 am

    What is the nutritional value for these egg cups?

    Reply
  2. Chas Greener says

    01.16.2019 at 10:14 am

    These are so fun and look delicious. Thanks for sharing

    Reply
  3. Alice V-DIYerfy says

    01.18.2019 at 7:11 am

    I love this idea and I like that you can just put everything together and throw it in the oven. I usually don’t make things like this because you have to cook some of the ingredients before but the ham is a great idea and so is the broccoli. Thank you for sharing this post with us at #OMHGWW!

    Reply
  4. Brittany Snyder says

    01.18.2019 at 10:56 pm

    My husband and I are starting a round of 21 Day fix and these will be PERFECT for breakfast or even lunch in a pinch, can’t wait to try this recipe. Have a great weekend 🙂

    Reply
  5. Jhuls | The Not So Creative Cook says

    01.20.2019 at 3:08 am

    I love these – something you can make ahead. I love egg cups. Thanks a bunch for sharing at Fiesta Friday party!

    Reply
  6. Miz Helen says

    01.22.2019 at 11:56 am

    Your Ham Veggie Baked Egg Cups look delicious and I really love the little silicone cups. Hope you are having a great week and staying warm. Thanks so much for sharing with us at Full Plate Thursday and come back soon!
    Miz Helen

    Reply
  7. Rita says

    01.22.2019 at 10:36 pm

    Pinning this recipe. Love the cups and will make them soon. Thanks for sharing at fiesta friday.

    Reply

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